Index

A

Analyser (class in pyTEnrich.Analyser)

B

basen_no_ext() (in module pyTEnrich.funs)

Bedtools_launcher (class in pyTEnrich.Bedtools_launcher)

C

check_te_db() (pyTEnrich.Db_container.Db_container method) clean_up_temp() (pyTEnrich.Bedtools_launcher.Bedtools_launcher method) (pyTEnrich.Db_container.Db_container method)

compute_size_genome() (pyTEnrich.Db_container.Db_container method) counting() (pyTEnrich.Analyser.Analyser method) create_dir() (in module pyTEnrich.funs)

D

Db_container (class in pyTEnrich.Db_container)

F

fdr() (pyTEnrich.Analyser.Analyser method)

G

Genomic_region_container (class in pyTEnrich.Genomic_region_container) Genomic_regions (class in pyTEnrich.Genomic_regions)

get_names() (pyTEnrich.Db_container.Db_container method) get_pd_stats() (pyTEnrich.Analyser.Analyser method) get_significance() (pyTEnrich.Analyser.Analyser method)

H

handle_genome_subset() (pyTEnrich.Db_container.Db_container method)

I

increment_n_i() (pyTEnrich.Genomic_regions.Genomic_regions method) increment_peak_n_i() (pyTEnrich.Genomic_region_container.Genomic_region_container method)

increment_te_n_i() (pyTEnrich.Genomic_region_container.Genomic_region_container method) intersect() (pyTEnrich.Bedtools_launcher.Bedtools_launcher method)

L

load_te_summary() (pyTEnrich.Genomic_region_container.Genomic_region_container method)

logger() (in module pyTEnrich.funs)

M

make_bed_summary() (pyTEnrich.Db_container.Db_container method) make_peak_subset() (pyTEnrich.Db_container.Db_container method) make_single_peak_subset() (pyTEnrich.Db_container.Db_container method) make_te_subset() (pyTEnrich.Db_container.Db_container method) make_te_summary() (pyTEnrich.Db_container.Db_container method) module pyTEnrich.Analyser pyTEnrich.Bedtools_launcher pyTEnrich.Db_container pyTEnrich.funs pyTEnrich.Genomic_region_container pyTEnrich.Genomic_regions

P

pyTEnrich.Analyser module pyTEnrich.Bedtools_launcher module pyTEnrich.Db_container module

pyTEnrich.funs module pyTEnrich.Genomic_region_container module pyTEnrich.Genomic_regions module

R

reformat_intersect() (pyTEnrich.Bedtools_launcher.Bedtools_launcher method)

S

single_task() (pyTEnrich.Analyser.Analyser method)

sort_genome_subset() (pyTEnrich.Db_container.Db_container method)

T

test_gz_file() (in module pyTEnrich.funs)

W

write_stats() (pyTEnrich.Analyser.Analyser method)